Sodding Phosphorus!

Here is a sample of the aforesaid element:

Phosphorus has two main forms, or allotropes. When first extracted, it’s white and extremely toxic. The form illustrated above is red phosphorus of course. Left to itself, white phosphorus gradually turns into its red form, which is why the so-called “white” allotrope usually looks yellow:

This is not, however, supposed to be “all about phosphorus”. Rather, it’s about two issues which affect the element, both to do with life, one on this planet and one in the Universe generally.

I’ll start by explaining the importance of phosphorus to life as we know it. There are six elements making up most of the body of a living organism on Earth. These are carbon, hydrogen, oxygen, nitrogen, sulphur and phosphorus. Carbon is important because it can form chains and rings from which complex molecules can be built. It’s notable that even though silicon is far more abundant on this planet than carbon, life is nonetheless carbon-based. This is to do with things like carbon’s ability to link itself into chains, form double and triple bonds with other atoms, the fact that its atoms are small compared to silicon and the difficulty of getting silicon out of molecules such as silica which may be formed as a result of any putative biochemical processes. Carbon dioxide, the analogue of silicon, is a gas at fairly low temperatures and can be incorporated into other structures. It so happens that I do think silicon-based life is possible, but it would have to be created artificially and exist in some kind of closed environment whose contents were carefully selected. The chances of silicon-based life arising without intelligent intervention are very low. The greater terrestrial abundance of another element should be considered again here, but not right now. Hydrogen and oxygen are of course the constituents of water, a compound which is really unusual in many ways, such as its unusually high melting and boiling points on the surface of this planet, its ability to dissolve other compounds and the fact that it gets less dense as it cools below 4°C. These properties mean respectively that the chemical reactions needed for life as we know it can occur at a temperature where there’s enough energy for them to take place but not so much that they’d be unstable, that the compounds are in a liquid medium conducive to reactions in the first place and that the oceans, lakes and rivers don’t freeze solid from the bottom up. The two constituents are useful in their own right. Oxygen and hydrogen are components of countless compounds, including carbohydrates, amino acids, proteins and fats. Oxygen, unlike chlorine which has been considered as a possible alternate breathing gas for alien life, can form two bonds, meaning that it isn’t the dead end single-bonding atom which the halogens are. Nitrogen is a essential component of protein via its presence in amino acids. Amino acids have a carbon connected to a carboxyl group and an amino group, which can bond together to form chains, and a functional group such as a benzene ring or a sulphur atom which can have other biological functions. Proteins, in other words. There are also chemicals called alkaloids which occur mainly in plants and vary a lot, which have striking pharmacological effects, and the nucleotides are also rings containing nitrogen, encoding genes in DNA and RNA. Nitrogen is actually so reactive that it bonds strongly to other atoms, including other nitrogen atoms, and consequently it’s vital that various organisms can uncouple it and combine it for the benefit of the rest of the biosphere. This is known as nitrogen fixation and is performed mainly by bacteria and certain plants, and also by lightning, but if life had to rely on lightning to do this, it would not be widespread and nitrogen fixed by lightning would be the limiting factor in global biomasse. Sulphur is significantly found in a couple of amino acids and allows proteins to form more complex shapes as are needed, for example, by enzymes and hormone receptors, because they form bridges with other amino acids making the molecule tangle usefully together. It’s also found in hair, nails and various other substances such as the substances responsible for the smell of garlic and onions. Sulphur is actually a bit of an exception in the chief elements required for life because sometimes it can be substituted by either selenium or tellurium, and there are amino acids which have these elements in sulphur’s place, but both of them are much scarcer than sulphur.

Then there’s phosphorus. Phosphorus has more limited functions than the others but these are incredibly vital. It forms part of adenosine triphosphate, which organisms use to transfer energy from respiration to the other functions of the body. It also forms part of the double layers of molecules which form membranes and allow controlled and specialised environments to exist in which the chemical reactions essential to life take place, and also enables substances to be packaged, as with neurotransmitters. Thirdly, it forms the strands of sugar phosphate which hold DNA and RNA together, so even if it didn’t do anything else, some kind of method would have to exist to store genetic information. This is perhaps the least vital role though. A more restricted role is found in most vertebrates, in that it forms part of the mineral matrix of bones and teeth, but there’s plenty of life that doesn’t do this and the usual substances used to make hard parts of animals are silicates and calcium carbonate, among other rarer examples such as iron pyrite. Nonetheless, humans need phosphorus for that reason too, as do our close relatives. However, even the closely related sea urchins use calcium carbonate instead.

Hence several facts emerge from all this. One is that an apparently similar and more abundant element can’t necessarily be used for a similar function, assuming here that life can start from scratch. Another is that elements can get themselves into such a strongly bound state that it would take too much energy to use them for it to be worth it for life. A third is that life will sometimes substitute another element for the one it usually employs if it can. If a rare element is used, there’s usually a good reason for it.

Now the first problem with phosphorus is that it’s much more abundant inside a living thing than in its non-living environment, and the cycle that replenishes it is very slow. Phosphorus usually becomes available to the biosphere on land as a result of continental drift, the formation of mountains and erosion and weathering, and it’s lost to the land when it’s washed into rivers and the sea, where it disappears into sediment before becoming available again millions of years later. In the sea, it’s less of a problem but still a significant one because it’s only available to life as phosphates and it’s often found as phosphides instead. Ironically, there’s also an overabundance problem with phosphates in fertilisers being washed into bodies of water and leading to algal blooms, which can in fact be of cyanobacteria rather than algæ as such. Since some microörganisms can produce extremely powerful toxins, this can lead to massive marine die-offs and contaminated sea food. Where I live, a nearby reservoir was afflicted by an algal bloom and had to be closed off for quite some time, and this can also poison wildlife on land. These can also lead to high biochemical oxygen demand, which is where all the oxygen gets used up and the water becomes anoxic, which is incidentally a cause of mass extinctions, though on a much larger scale, in the oceans. This happens because phosphorus is relatively scarce and a significant limiting factor in how much life is possible in a given area, so a sudden influx of usable phosphate is likely to cause a chemical imbalance.

The Alchemist Discovering Phosphorus, Joseph Wright, 1771 and 1795.

This painting is thought to refer to the discovery of the element by Hennig Brand in 1669. Brand discovered it when searching for the Philosopher’s Stone, by heating boiled down urine and collecting the liquid which dripped off it. It turns out that this is actually quite an inefficient process and it’s possible to extract a lot more of the phosphorus by other means. The allotrope illustrated in the painting is unfortunately the highly toxic and dangerous white variety, so the alchemist is putting himself in peril by kneeling so close to the retort. The point to remember in all this is that phosphorus is found in urine, not in huge amounts but enough. This points towards a particular problem, highlighted by Isaac Asimov in his 1971 essay ‘Life’s Bottleneck’, which points out that humans “may be able to substitute nuclear power for coal, and plastics for wood, and yeast for meat, and friendliness for isolation—but for phosphorus there is neither substitute nor replacement”. Urine goes down the toilet and is flushed into the sewers, processed in sewage farms and the phosphorus from it ends up in the sea. It does gradually return to the land in biological ways. For instance, a seagull may die on land and her bones may become part of the terrestrial ecosystem, or she might just poo everywhere and return it that way, but the occasional gull or tern conking out in Bridlington is no compensation for millions of people flushing the loo several times a day. By doing this, we are gradually removing phosphorus from the land and returning it to the sea, whence it won’t return on the whole for millions of years.

Two ways round this suggest themselves. One is to eat more sea food. For a vegan, this is unfeasible and in any case fishing causes a lot of plastic pollution and is unsustainable, but of course it is possible to eat seaweed, and I do this. The other is not to allow urine into sewage in the first place or to process sewage differently. I have been in the habit of dumping urine in the garden, although I haven’t done this as much recently. It also contains potassium, and in particular fixed nitrogen, so in diluted form it is indeed useful for raising crops. However, this is on a small scale and a better system might be to process the sewage differently and put it on the land, being careful to ensure that harmful microbes and medication have been neutralised before doing so. Regarding seaweed, dulse, for example, is 3% of the RDI of phosphorus by dried weight, compared to the much lower amounts in most fish. Cuttlefish is the highest marine animal source. Human urine averages 0.035%, so you’d have to eat a lot of seaweed. However, in isolation, if you don’t, there will be a constant loss of phosphorus to the land. Guano is one solution, but not ideal and only slowly renewable.

The other problem with phosphorus follows from the same scarcity and the same use in living systems, but is more cosmic in scale, and I personally find it more worrying: phosphorus is rare on a cosmic level. In a way, all atomic matter is rare in this sense because the Universe is, as the otherwise really annoying Nick Land once said, “a good try at nothing” (apparently nobody has ever quoted that before, so that’s a first!). The cosmic abundance of the different elements looks like this:

The Y axis is a logarithmic scale, so for instance hydrogen is about ten times as abundant as helium and even in terms of mass is more common than any other element except helium. One notable thing about this graph other than the clear rapid decline in abundance with atomic number (the X axis) is that it zig-zags because even-numbered elements are more frequently found than their odd-numbered neighbours. This is because many elements are formed by the collision of α particles, which consist of two protons and two neutrons. Phosphorus is flanked by Silicon and Sulphur on here, though it isn’t specifically marked, and its atomic number is fifteen, i.e. an odd number. Chlorine, which is quite common in living things because it’s part of salt, is less common still.

Elements are formed in various ways, and this relates to how common they are. The Big Bang led to the formation of mainly hydrogen and helium a few minutes later, as soon as the Universe was cool enough to allow their nuclei to hold together and their nucleons to form, although they would’ve been ionised for quite some time rather than being actual atoms. Small amounts of lithium and beryllium formed in the same way, and if the graph is anything to go by this looks like it might’ve been the main way beryllium in particular formed. Then the stars formed and the pressure inside them led to helium nuclei in particular being pushed together to form heavier elements. The crucial step in this phase is the formation of calcium when three helium nuclei collide. Then, a number of other things happen. The star may end up going supernova and scattering its heavier elements through the local galactic neighbourhood. It may also form new elements in the process of exploding through radiation. This was until fairly recently thought to be the main means heavier elements were formed, but another way has recently been discovered. When a star not quite massive enough to become a black hole collapses, it forms into what is effectively a giant atomic nucleus the size of a city known as a neutron star. When these collide, they kind of “splat” into lots of droplets. Neutrons are only stable within atomic nuclei. Outside them they last about a quarter of an hour before breaking down, and they often become protons in doing so. This means that many of the neutronium droplets form into heavier elements, which are then pushed away by an unimaginably powerful neutrino burst from the neutron stars and again scattered into the galactic neighbourhood. Two elements, beryllium and boron, are mainly formed by cosmic rays splitting heavier atoms. Some, particularly transition metals such as chromium and manganese, formed in white dwarf stars which then exploded, and technetium along with all the heaviest elements, have been generated by human activity.

At first, the abundance of phosphorus didn’t seem to be a big problem. However, after studying supernova remnants, scientists at Cardiff University seem to have found that there is a lot less produced in supernova than had been previously thought. This means that phosphorus is likely only to be as common as it is here in this solar system in star systems which formed near the right kind of supernova to generate it in relatively large amounts. Couple this with the essential function of phosphorus in DNA, RNA, membranes and ATP, particularly the last, and it seems to mean that at this point in the history of the Universe, life as is well-known on Earth is likely only to be found in initially localised areas, surrounded by vast tracts of lifeless space. The systems containing life would gradually separate and spread out through the Galaxy due to the migration of the stars as they orbit the centre of the Milky Way, but they would remain fairly sparse. However, as time goes by and the Universe ages, there will be more such supernovæ and phosphorus will slowly become more common, making our kind of life increasingly likely. If life always does depend on phosphorus, we may simply be unusually early in the history of the Universe, and in many æons time there will be much more life. This possible limitation may have another consequence. We may be living in a star system isolated from others which are higher than average in phosphorus, meaning that to exist as biological beings with a viable ecosystem around us elsewhere, we would either have to take enough phosphorus with us or make our own, and even the several light years between stars which we already find intimidating is dwarfed by the distances between phosphorus-rich systems in the Galaxy, which may once have been near us but no longer are, and not only do we have to schlep ourselves across the void, but also we have to take a massive load of phosphorus with us wherever we go.

But that is biological life as we know it. A couple of other thoughts occur. One is that there could conceivably be life as we don’t know it. This doesn’t work as well if the substitution of phosphorus is the main difference, because if that could happen, it presumably would’ve happened with us, and it didn’t, because other elements with similar functions would’ve worked better if they were more abundant and out-competed with the life which actually did arise unless there’s something about this planet which does something else like lock the possible other options away chemically or something. However, there could just be drastically different life, based perhaps on plasma instead of solid and liquid matter on planets and moons, which has no need for phosphorus or even chemistry, on nuclear reactions taking place between nucleons on the surface of a neutron star as suggested by Robert L Forward’s SF book ‘Dragon’s Egg’, or even nuclear pasta inside neutron stars. Maybe it isn’t that life is rare in the Universe, but that life as we know it is, partly because it needs to use phosphorus.

There is another possibility. We are these flimsy wet things crawling about a planet somewhere in the Galaxy, but we’ve also made machines. In our own history, we are the results of genes, and perhaps also mitochondria and flagella, concealing themselves inside cells and proceeding to build, through evolution, relatively vast multicellular machines to protect themselves. Maybe history is about to repeat itself and we are going to build our own successors, or perhaps symbionts, in the form of AI spacecraft which go out into the Universe and reproduce. Perhaps machine life is common in the Galaxy and we’re just the precursors. There is an obvious problem with this though, mentioned a long time ago: what’s to stop swarms of self-replicating interstellar probes from dismantling planets and moons and making trillions of copies of themselves? If this arises through a mutated bug in their software, it would be to their advantage, and they could be expected to be by far the most widespread “life” in the Universe. Yet this doesn’t seem to have happened. If it hasn’t, maybe the beings which built these machines never existed either. Or maybe they’re just more responsible than we are.